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<art>
   <ui>1465-9921-7-138</ui>
   <ji>RRJ</ji>
   <fm>
      <dochead>Research</dochead>
      <bibl>
         <title>
            <p>Progression of pulmonary hyperinflation and trapped gas associated with genetic and environmental factors in children with cystic fibrosis</p>
         </title>
         <aug>
            <au id="A1" ca="yes">
               <snm>Kraemer</snm>
               <fnm>Richard</fnm>
               <insr iid="I1"/>
               <insr iid="I2"/>
               <email>richard.kraemer@insel.ch</email>
            </au>
            <au id="A2">
               <snm>Baldwin</snm>
               <mi>N</mi>
               <fnm>David</fnm>
               <insr iid="I2"/>
               <email>dn_baldwin@hotmail.com</email>
            </au>
            <au id="A3">
               <snm>Ammann</snm>
               <mi>A</mi>
               <fnm>Roland</fnm>
               <insr iid="I1"/>
               <email>roland.ammann@insel.ch</email>
            </au>
            <au id="A4">
               <snm>Frey</snm>
               <fnm>Urs</fnm>
               <insr iid="I1"/>
               <insr iid="I2"/>
               <email>urs.frey@insel.ch</email>
            </au>
            <au id="A5">
               <snm>Gallati</snm>
               <fnm>Sabina</fnm>
               <insr iid="I1"/>
               <insr iid="I3"/>
               <email>sabina.gallati@insel.ch</email>
            </au>
         </aug>
         <insg>
            <ins id="I1">
               <p>Department of Paediatrics, University of Berne, Inselspital CH-3010 Berne, Switzerland.</p>
            </ins>
            <ins id="I2">
               <p>Division of Pediatric Respiratory Medicine, Department of Pediatrics, University of Berne, Inselspital, CH-3010 Berne, Switzerland.</p>
            </ins>
            <ins id="I3">
               <p>Division of Human Genetics, Department of Pediatrics, University of Berne,, Inselspital, CH-3010 Berne, Switzerland.</p>
            </ins>
         </insg>
         <source>Respiratory Research</source>
         <issn>1465-9921</issn>
         <pubdate>2006</pubdate>
         <volume>7</volume>
         <issue>1</issue>
         <fpage>138</fpage>
         <url>http://respiratory-research.com/content/7/1/138</url>
         <xrefbib>
            <pubidlist>
               <pubid idtype="pmpid">17137500</pubid>
               <pubid idtype="doi">10.1186/1465-9921-7-138</pubid>
            </pubidlist>
         </xrefbib>
      </bibl>
      <history>
         <rec>
            <date>
               <day>07</day>
               <month>8</month>
               <year>2006</year>
            </date>
         </rec>
         <acc>
            <date>
               <day>30</day>
               <month>11</month>
               <year>2006</year>
            </date>
         </acc>
         <pub>
            <date>
               <day>30</day>
               <month>11</month>
               <year>2006</year>
            </date>
         </pub>
      </history>
      <cpyrt>
         <year>2006</year>
         <collab>Kraemer et al; licensee BioMed Central Ltd.</collab>
         <note>This is an Open Access article distributed under the terms of the Creative Commons Attribution License (<url>http://creativecommons.org/licenses/by/2.0</url>), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</note>
      </cpyrt>
      <abs>
         <sec>
            <st>
               <p>Abstract</p>
            </st>
            <sec>
               <st>
                  <p>Background</p>
               </st>
               <p>Functional deterioration in cystic fibrosis (CF) may be reflected by increasing bronchial obstruction and, as recently shown, by ventilation inhomogeneities. This study investigated which physiological factors (airway obstruction, ventilation inhomogeneities, pulmonary hyperinflation, development of trapped gas) best express the decline in lung function, and what role specific <it>CFTR </it>genotypes and different types of bronchial infection may have upon this process.</p>
            </sec>
            <sec>
               <st>
                  <p>Methods</p>
               </st>
               <p>Serial annual lung function tests, performed in 152 children (77 males; 75 females) with CF (age range: 6&#8211;18 y) provided data pertaining to functional residual capacity (FRC<sub>pleth</sub>, FRC<sub>MBNW</sub>), volume of trapped gas (V<sub>TG</sub>), effective specific airway resistance (sR<sub>eff</sub>), lung clearance index (LCI), and forced expiratory indices (FVC, FEV<sub>1</sub>, FEF<sub>50</sub>).</p>
            </sec>
            <sec>
               <st>
                  <p>Results</p>
               </st>
               <p>All lung function parameters showed progression with age. Pulmonary hyperinflation (FRC<sub>pleth </sub>> 2SDS) was already present in 39% of patients at age 6&#8211;8 yrs, increasing to 67% at age 18 yrs. The proportion of patients with V<sub>TG </sub>> 2SDS increased from 15% to 54% during this period. Children with severe pulmonary hyperinflation and trapped gas at age 6&#8211;8 yrs showed the most pronounced disease progression over time. Age related tracking of lung function parameters commences early in life, and is significantly influenced by specific <it>CFTR </it>genotypes. The group with chronic <it>P. aeruginosa </it>infection demonstrated most rapid progression in all lung function parameters, whilst those with chronic <it>S. aureus </it>infection had the slowest rate of progression. LCI, measured as an index of ventilation inhomogeneities was the most sensitive discriminator between the 3 types of infection examined (<it>p </it>&lt; 0.0001).</p>
            </sec>
            <sec>
               <st>
                  <p>Conclusion</p>
               </st>
               <p>The relationships between lung function indices, <it>CFTR </it>genotypes and infective organisms observed in this study suggest that measurement of other lung function parameters, in addition to spirometry alone, may provide important information about disease progression in CF.</p>
            </sec>
         </sec>
      </abs>
   </fm>
   <meta>
      <classifications>
         <classification type="bmc" subtype="user_supplied_xml" id="endnote"/>
      </classifications>
   </meta>
   <bdy>
      <sec>
         <st>
            <p>Background</p>
         </st>
         <p>Cystic fibrosis (CF) is the most common life-shortening genetic disease among Caucasians, being caused by mutations of the cystic fibrosis transmembrane conductance regulator (<it>CFTR</it>) gene <abbrgrp><abbr bid="B1">1</abbr></abbrgrp>. Dysregulation of epithelial chloride channels results in dehydration of the luminal surface of exocrine cells, increased mucus viscosity and altered mucociliary clearance. The occurrence of these changes most likely follows periciliary liquid layer depletion and together are responsible for the CF phenotype <abbrgrp><abbr bid="B2">2</abbr><abbr bid="B3">3</abbr><abbr bid="B4">4</abbr><abbr bid="B5">5</abbr></abbrgrp>. Recent data have linked the abnormal ion transport properties of CF airway epithelia to depleted airway surface liquid volume, reflecting the combined defects of accelerated Na<sup>+ </sup>transport and the failure to secrete Cl<sup>-</sup>. Depletion of a specific compartment of the airway surface liquid, i.e. the periciliary fluid, appears to abrogate both cilia-dependent and cough clearance <abbrgrp><abbr bid="B4">4</abbr><abbr bid="B6">6</abbr></abbrgrp>. Mucus clearance is a major component of the lung's innate defense mechanism. The efficiency of mucus clearance reflects in part the volume of airway surface liquid (ASL) on airway surfaces. The ASL is comprised of a periciliary liquid layer (PCL), which lubricates the cell surface, and a mucus layer, which traps airborne particles and pathogens <abbrgrp><abbr bid="B7">7</abbr></abbrgrp>. Cystic fibrosis airways exhibit Na<sup>+ </sup>hyperabsorption and Cl<sup>- </sup>hyposecretion, which leads to ASL volume depletion, mucus stasis, and mucus plugging. These mucus plugs are the site of persistent bacterial infections that lead to a massive neutrophil infux and raised immune responses that promote airway remodeling <abbrgrp><abbr bid="B8">8</abbr></abbrgrp>. Regulation of ASL volume is poorly understood <abbrgrp><abbr bid="B9">9</abbr></abbrgrp>, although Tarran et al. recently showed that CF airway epithelia lack <it>CFTR</it>-dependent Cl<sup>- </sup>secretion and exhibit Na<sup>+ </sup>hyperabsorption, leaving CF cultures only partially able to adjust ASL volume <abbrgrp><abbr bid="B9">9</abbr><abbr bid="B10">10</abbr></abbrgrp>. Bacterial colonization, infection, and chronic pulmonary inflammation develop subsequently. Pulmonary complications account for most of the morbidity and mortality in CF patients, and the majority of patients with CF die from respiratory failure due to endobronchial infection and neutrophil-dominated inflammation <abbrgrp><abbr bid="B11">11</abbr><abbr bid="B12">12</abbr></abbrgrp>. Advances in the care of patients with CF have improved survival, and as a result, patients with the disease now often live beyond the third decade <abbrgrp><abbr bid="B13">13</abbr></abbrgrp>. The heterogeneous course of disease progression observed in CF remains incompletely explained and most likely reflects the influence of multiple, interrelated factors. These may include differences in <it>CFTR </it>mutation and presence of infective organisms within the respiratory tract <abbrgrp><abbr bid="B14">14</abbr><abbr bid="B15">15</abbr></abbrgrp>.</p>
         <p>Previous studies in patients with CF have demonstrated the presence of ventilation inhomogeneities <abbrgrp><abbr bid="B16">16</abbr><abbr bid="B17">17</abbr></abbrgrp>, pulmonary hyperinflation <abbrgrp><abbr bid="B18">18</abbr><abbr bid="B19">19</abbr><abbr bid="B20">20</abbr><abbr bid="B21">21</abbr></abbrgrp> and gas trapping <abbrgrp><abbr bid="B22">22</abbr></abbrgrp> as early as during the first years of life <abbrgrp><abbr bid="B17">17</abbr><abbr bid="B18">18</abbr><abbr bid="B19">19</abbr></abbrgrp>, and these may progress during childhood <abbrgrp><abbr bid="B16">16</abbr><abbr bid="B20">20</abbr></abbrgrp>. Only few observational population-based studies <abbrgrp><abbr bid="B23">23</abbr><abbr bid="B24">24</abbr><abbr bid="B25">25</abbr><abbr bid="B26">26</abbr></abbrgrp> have specifically evaluated progression of lung function characteristics such as airway obstruction, ventilation inhomogeneities, pulmonary hyperinflation, and development of trapped gas over time. We have previously reported observations that inequalities in ventilation occur significantly earlier in the course of lung function decline than other functional characteristics <abbrgrp><abbr bid="B16">16</abbr></abbrgrp>. Here we hypothesize that functional consequences of lung disease in CF extend beyond simple bronchial obstruction, and should be examined in terms of alveolar volume, including gas trapping, as well as alveolar ventilation.</p>
         <p>In the current study we investigated (<it>i</it>) whether or not pulmonary hyperinflation and/or trapped gas represent further indicators of functional deterioration that should be monitored during childhood. Moreover, we attempted (<it>ii</it>) to define the role of specific <it>CFTR </it>genotypes and the influence of <it>PA </it>infection upon rates of disease progression. Finally, we intended (<it>iii</it>) to demonstrate whether or not those young children in whom respiratory dysfunction occurs earliest and with greatest severity, are more likely to follow a more rapid decline in pulmonary function, consistent with the concept of functional tracking over time. Progressive functional deterioration of this type has been previously reported in several chronic respiratory diseases including bronchial asthma <abbrgrp><abbr bid="B27">27</abbr><abbr bid="B28">28</abbr></abbrgrp> chronic lung disease of infancy <abbrgrp><abbr bid="B29">29</abbr></abbrgrp> and cystic fibrosis <abbrgrp><abbr bid="B16">16</abbr><abbr bid="B25">25</abbr><abbr bid="B26">26</abbr><abbr bid="B30">30</abbr></abbrgrp>.</p>
      </sec>
      <sec>
         <st>
            <p>Study population and methods</p>
         </st>
         <sec>
            <st>
               <p>Bernese Cystic Fibrosis Patient Data Registry</p>
            </st>
            <p>This prospective registry was initiated in 1978 as an extension of the American Cystic Fibrosis Patient Registry founded by Warwick in 1966 <abbrgrp><abbr bid="B31">31</abbr></abbrgrp>, and comprises systematic clinical and lung function data obtained from CF patients reviewed as inpatients and outpatients over a time span of 28 years. This comprehensive source provided data for the observational cohort study which were reviewed according to the following inclusion criteria: (<it>i</it>) CF diagnosis based on the presence of characteristic phenotypic features <abbrgrp><abbr bid="B32">32</abbr><abbr bid="B33">33</abbr></abbrgrp>, (<it>ii</it>) confirmed by a duplicate quantitative pilocarpine iontophoresis sweat test measuring both Na and Cl values > 60 mEq/L as well as by (<it>iii</it>) genotype identification using extended mutation screening of both alleles <abbrgrp><abbr bid="B34">34</abbr><abbr bid="B35">35</abbr></abbrgrp>, and (<it>iv</it>) complete documentation of a minimum of 4 lung function tests performed annually between age 6&#8211;18 y. The study protocol was approved by the Departmental Ethics Committee of the University Children's Hospital and by the Government Ethics Committee of the State of Berne, Switzerland. Parts of the lung function data from this cohort have been reported previously <abbrgrp><abbr bid="B16">16</abbr></abbrgrp>.</p>
         </sec>
         <sec>
            <st>
               <p>Pulmonary Function Measurements</p>
            </st>
            <p>Spirometry and flow volume curves were obtained by whole body plethysmography using a volume-constant, pressure-variable plethysmograph with air bag body temperature and pressure saturated (BTPS) compensation unit (BodyScreen, Jaeger W&#252;rzburg, Germany) until December 4, 1993. Thereafter, the MasterLab plethysmograph was employed (MasterLab, Jaeger W&#252;rzburg, Germany). This instrument uses electronic BTPS-compensation. Children were requested to breathe at coached normal frequency during shutter closure (no panting) for measurements of functional residual capacity (FRC<sub>pleth</sub>). Prior to plethysmographic measurements, resting end-expiratory lung volume (FRC<sub>MBNW</sub>) and quantification of ventilation inhomogeneities (LCI) was determined by open-circuit multibreath nitrogen washout (MBNW) technique <abbrgrp><abbr bid="B36">36</abbr></abbrgrp> using the Pediatric Pulmonary Unit (SensorMedics 2200, Yorba Linda, Ca, USA). This procedure enabled longitudinal assessment of the following parameters: (<it>i</it>) FRC<sub>pleth </sub>measured by whole-body plethysmography, (<it>ii</it>) FRC<sub>MBNW </sub>measured by MBNW technique, combining both measurements to calculate (<it>iii</it>) an index of the volume of trapped gas (V<sub>TG </sub>= FRC<sub>pleth </sub>-FRC<sub>MBNW</sub>) <abbrgrp><abbr bid="B37">37</abbr></abbrgrp> and (<it>iv</it>) effective specific airway resistance (sR<sub>eff</sub>). Following a short rest period, indices of forced expiratory air flow limitation including (<it>v</it>) forced vital capacity (FVC), (<it>vi</it>) forced expired volume in one second (FEV<sub>1</sub>) and (<it>vii</it>) maximal expired volume at 50 percent of FVC (FEF<sub>50</sub>) were calculated from maximal expiratory flow volume curves. All measurements were stored for offline analysis and the 3&#8211;5 technically most satisfactory maneuvers were chosen for analysis using a computer system adapted for children (MasterLab, Jaeger W&#252;rzburg, Germany). With the exception of LCI, all values were expressed as a standard deviation score (SDS) based on gender- and age-specific regression equations <abbrgrp><abbr bid="B38">38</abbr><abbr bid="B39">39</abbr><abbr bid="B40">40</abbr></abbrgrp>. Interpretation of LCI data required a z-transformation of log-transformed gender-specific data obtained in healthy subjects <abbrgrp><abbr bid="B38">38</abbr></abbrgrp>. Technical details are given elsewhere <abbrgrp><abbr bid="B16">16</abbr><abbr bid="B41">41</abbr></abbrgrp>.</p>
            <p>We have recently identified lung clearance index (LCI) obtained by multiple breath nitrogen washout (MBNW) technique <abbrgrp><abbr bid="B16">16</abbr></abbrgrp>, followed by MEF<sub>50 </sub>and FRC<sub>pleth </sub>as the strongest indicators of disease progression. Furthermore, LCI was observed to reflect progressive deterioration in lung function earlier in life than alterations occurring in FEV<sub>1. </sub>Assessment of the degree of airway obstruction alone may therefore be inadequate for following progression of lung disease in CF. For example, in patients with end-stage CF lung disease, pulmonary hyperinflation is correlated with gas exchange characteristics <abbrgrp><abbr bid="B42">42</abbr></abbrgrp>. Physiologically, at least five potential mechanisms of functional deterioration exist that may alter gas exchange, including: (<it>a</it>) progression of pulmonary hyperinflation, represented by FRC<sub>pleth</sub>, (<it>b</it>) progression of ventilation inhomogeneities (LCI), (<it>c</it>) development of trapped gas (V<sub>TG</sub>), (<it>d</it>) airway narrowing (sR<sub>eff</sub>) and (<it>e</it>) small airway disease (FEV<sub>1 </sub>and FEF<sub>50</sub>).</p>
            <p>Therefore, progression of disease as quantified by the tracking of lung function decline was evaluated by stratification of patients into 4 subgroups according to the following criteria:</p>
            <p>1) Group FN included 24 patients with functionally normal FRC<sub>pleth </sub>and normal LCI at entry.</p>
            <p>2) Group VIH comprised 71 patients in whom only ventilation inhomogeneities were present (normal FRC<sub>pleth</sub>; LCI > 2SDS; no trapped gas).</p>
            <p>3) Group PH included 29 patients with pulmonary hyperinflation (FRC<sub>pleth </sub>> 2SDS) in the absence of trapped gas. Each of these children also had ventilation inhomogeneities present (LCI > 2SDS).</p>
            <p>4) Group PH&amp;TG comprised 28 patients with pulmonary hyperinflation (FRC<sub>pleth </sub>> 2SDS), trapped gas (V<sub>TG </sub>> 2SDS) and elevated LCI.</p>
         </sec>
         <sec>
            <st>
               <p>Genotype analysis</p>
            </st>
            <p>Genomic DNA was extracted from EDTA blood samples using the QIAamp Maxi Kit (Qiagen) according to the manufacturer's recommendations and quantified by spectrophotometry. In addition, a non-invasive method of buccal cell brushing <abbrgrp><abbr bid="B43">43</abbr></abbrgrp> was used to obtain DNA from premature infants, recipients of previous blood transfusions and infants with meconium ileus. Mutation screening of the entire coding sequences of the <it>CFTR </it>gene (including the 27 exons and exon/intron boundaries, intron 11 and 19, as well as the promoter region) was performed for each patient using a well-established single strand conformation polymorphism/heteroduplex (SSCP/HD) analysis. This was followed by direct sequencing of the variants, thus permitting rapid and sensitive detection of 97 &#8211; 98% of known and novel (newly identified) CF mutations, as previously described <abbrgrp><abbr bid="B34">34</abbr><abbr bid="B44">44</abbr><abbr bid="B45">45</abbr></abbrgrp>.</p>
         </sec>
         <sec>
            <st>
               <p>Microbiology</p>
            </st>
            <p>Sputum and throat swabs were obtained at each follow-up visit and cultured for various bacterial species including <it>H. influenzae, S. aureus </it>and <it>P. aeruginosa </it><abbrgrp><abbr bid="B46">46</abbr></abbrgrp>. Sampling, transport, culture and identification of strains from respiratory secretions were performed according to standard procedures <abbrgrp><abbr bid="B46">46</abbr></abbrgrp>. Sputum specimens were processed by the Institute of Microbiology, University of Berne, where they were inoculated on blood, chocolate and MacConkey agars <abbrgrp><abbr bid="B47">47</abbr></abbrgrp>. Strains of <it>P. aeruginosa</it>, <it>Staphylococcus aureus </it>and <it>Haemophilus influenzae </it>were tested for antibiotic susceptibility by the Kirby-Bauer paper disk method.</p>
         </sec>
         <sec>
            <st>
               <p>Data computation and statistical evaluation</p>
            </st>
            <p>In order to present individual values of lung function numerically and independent of gender, age and growth status, all lung function data were expressed as standard deviation score (SDS). The value obtained by z-transformation <abbrgrp><abbr bid="B48">48</abbr></abbrgrp> indicates the number of standard deviations (SD) a CF-patient deviates from the gender- and age-specific regression equations for healthy subjects reported previously <abbrgrp><abbr bid="B38">38</abbr><abbr bid="B39">39</abbr><abbr bid="B40">40</abbr></abbrgrp>. Repeated measurements of lung function data were first calculated as mean &#177; SEM values per year over age for synoptical presentation. Linear mixed-effect model (LMM) analysis was used to assess the relationship between each lung function parameter and age <abbrgrp><abbr bid="B16">16</abbr><abbr bid="B49">49</abbr><abbr bid="B50">50</abbr><abbr bid="B51">51</abbr><abbr bid="B52">52</abbr></abbrgrp>, (<it>i</it>) to obtain reliable estimates of individual changes over time of an outcome, and hence, to examine progression of each lung function parameter, and (<it>ii</it>) to study the role of potentially associated factors such as specific <it>CFTR </it>genotypes or bacterial colonization over the age range of 6&#8211;8 to 18 years. This technique is suited to analysis of the association between time and covariates from irregularly spaced serial data from individuals (i.e. repeated measurements), without being affected by missing data <abbrgrp><abbr bid="B49">49</abbr><abbr bid="B50">50</abbr><abbr bid="B51">51</abbr><abbr bid="B52">52</abbr></abbrgrp>. The various lung function parameters were modelled with age at observation as fixed effect, and a patient-specific intercept as random effect. A <it>t</it>-test assuming unequal variances was then performed to determine if regression slopes of the different lung function parameters in the whole sample differed from zero, and to test for differences of the regression slopes between groups. Holm's modification of the Bonferroni correction for multiple comparison was applied. The <it>p</it>-values significant at the 0.05 level after this correction are marked with an asterisk in the text and tables. Results with a significance level of p &lt; 0.05 were considered statistically significant. Prism software (version 4.0, GraphPad Software, Inc., San Diego, USA) was used for graphical, and SPSS (version 11, SPSS Inc., Chicago, USA) for statistical analysis.</p>
         </sec>
      </sec>
      <sec>
         <st>
            <p>Results</p>
         </st>
         <sec>
            <st>
               <p>Characteristics of the study population</p>
            </st>
            <p>The current Bernese Cystic Fibrosis Patient Data Registry contains data from a total of 190 CF patients who have been followed over the last 28 years. From this collective 152 (76.8%) fulfilled the inclusion criteria defined for the present study (Table <tblr tid="T1">1</tblr>). Fifteen patients have not yet reached the age of 6 years, and in 23 CF patients less than 4 annual lung function tests were available. Gender was approximately equally distributed. Within these 152 CF patients a total of 1460 lung function tests were performed, representing a median (range) of 10 (4 &#8211; 15) lung function tests per child, or 83 (29 &#8211; 116) lung function tests per year.</p>
            <tbl id="T1">
               <title>
                  <p>Table 1</p>
               </title>
               <caption>
                  <p>Patient cohort, data base characteristics, distribution of <it>CFTR </it>mutations, and stratification into different types of bronchial infection in study patients with cystic fibrosis</p>
               </caption>
               <tblbdy cols="7">
                  <r>
                     <c cspan="3" ca="left">
                        <p><b>Patient </b>(from database*)</p>
                     </c>
                     <c cspan="4" ca="center">
                        <p><b>Follow-up statistic </b>(from database*)</p>
                     </c>
                  </r>
                  <r>
                     <c cspan="7">
                        <hr/>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>
                           <it>n</it>
                        </p>
                     </c>
                     <c ca="center">
                        <p>
                           <it>%</it>
                        </p>
                     </c>
                     <c cspan="2" ca="center">
                        <p>number of tests</p>
                     </c>
                     <c cspan="2" ca="center">
                        <p>age ranges covered</p>
                     </c>
                  </r>
                  <r>
                     <c cspan="7">
                        <hr/>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>all</p>
                     </c>
                     <c ca="center">
                        <p>152</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="left">
                        <p>total</p>
                     </c>
                     <c ca="center">
                        <p>1460</p>
                     </c>
                     <c ca="center">
                        <p>6 to 10 y</p>
                     </c>
                     <c ca="center">
                        <p>80%</p>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>- males</p>
                     </c>
                     <c ca="center">
                        <p>77</p>
                     </c>
                     <c ca="center">
                        <p>50.7</p>
                     </c>
                     <c ca="left">
                        <p>per child</p>
                     </c>
                     <c ca="center">
                        <p>10 (4&#8211;15)</p>
                     </c>
                     <c ca="center">
                        <p>11 to 15 y</p>
                     </c>
                     <c ca="center">
                        <p>71%</p>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>- females</p>
                     </c>
                     <c ca="center">
                        <p>75</p>
                     </c>
                     <c ca="center">
                        <p>49.3</p>
                     </c>
                     <c ca="left">
                        <p>per year</p>
                     </c>
                     <c ca="center">
                        <p>83(29&#8211;116)</p>
                     </c>
                     <c ca="center">
                        <p>16 to 20 y</p>
                     </c>
                     <c ca="center">
                        <p>39%</p>
                     </c>
                  </r>
                  <r>
                     <c cspan="7">
                        <hr/>
                     </c>
                  </r>
                  <r>
                     <c cspan="7" ca="center">
                        <p>
                           <b>CFTR mutation stratification</b>
                        </p>
                     </c>
                  </r>
                  <r>
                     <c cspan="7">
                        <hr/>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>
                           <it>n</it>
                        </p>
                     </c>
                     <c ca="center">
                        <p>
                           <it>%</it>
                        </p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
                  <r>
                     <c cspan="7">
                        <hr/>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>&#916;F508(2)</p>
                     </c>
                     <c ca="center">
                        <p>86</p>
                     </c>
                     <c ca="center">
                        <p>56.6</p>
                     </c>
                     <c ca="center">
                        <p><b>Miscellaneous</b>: numbers in brackets</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>3905insT/&#916;F</p>
                     </c>
                     <c ca="center">
                        <p>13</p>
                     </c>
                     <c ca="center">
                        <p>8.6</p>
                     </c>
                     <c>
                        <p>&#916;F508 and<b/>1717-1G>A(4), W1282X(4), 2347delG(3), G524X(2), Q525X(2), N1303K(2), 621+1G>T(1),</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>R553X/&#916;F</p>
                     </c>
                     <c ca="center">
                        <p>10</p>
                     </c>
                     <c ca="center">
                        <p>6.6</p>
                     </c>
                     <c>
                        <p>2176insC(1), 394delTT(1), 4005+1G-A(1). 420del9(1), E585X(1), G126D(1), G85E(1), R347P(1), 1078delT(1);</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>Miscellaneous</p>
                     </c>
                     <c ca="center">
                        <p>43</p>
                     </c>
                     <c ca="center">
                        <p>28.3</p>
                     </c>
                     <c>
                        <p>3905insT and<b/>1717-1G>A(1),K710X(1), M1101K(1), Q39X(1), P5L(1), R553X(1);</p>
                        <p> R553X and<b/>R553X(1); </p>
                        <p>G542X and T5(3), G542X(1);</p>
                        <p><b/>Q542X and<b/>3732delA(2);</p>
                        <p><b/>N1303K and<b/>2347delG(1), 2789+5G>A(1);</p>
                        <p><b/>1199delG and<b/>R560S(1).</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
                  <r>
                     <c cspan="7">
                        <hr/>
                     </c>
                  </r>
                  <r>
                     <c cspan="7" ca="center">
                        <p>
                           <b>Stratification into different types of infection</b>
                        </p>
                     </c>
                  </r>
                  <r>
                     <c cspan="7">
                        <hr/>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>
                           <it>n</it>
                        </p>
                     </c>
                     <c ca="center">
                        <p>
                           <it>%</it>
                        </p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
                  <r>
                     <c cspan="7">
                        <hr/>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>free from any</p>
                     </c>
                     <c ca="center">
                        <p>6</p>
                     </c>
                     <c ca="center">
                        <p>3.9</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>intermittend with various*</p>
                     </c>
                     <c ca="center">
                        <p>34</p>
                     </c>
                     <c ca="center">
                        <p>22.4</p>
                     </c>
                     <c ca="center">
                        <p>* <it>H. influenzae, S. aureus, St. maltofilia</it></p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>
                           <it>S. aureus</it>
                        </p>
                     </c>
                     <c ca="center">
                        <p>19</p>
                     </c>
                     <c ca="center">
                        <p>12.5</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>
                           <it>P. aeruginosa</it>
                        </p>
                     </c>
                     <c ca="center">
                        <p>36</p>
                     </c>
                     <c ca="center">
                        <p>23.7</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p><it>P. aeruginosa </it>combined <it>S. aureus</it></p>
                     </c>
                     <c ca="center">
                        <p>57</p>
                     </c>
                     <c ca="center">
                        <p>37.5</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
               </tblbdy>
               <tblfn>
                  <p>*Actual number of patients in database: 198</p>
                  <p>Number of patient under age of 6 years: 13</p>
                  <p>Number of patients with follow-up data less than 4 annual lung function tests: 23</p>
               </tblfn>
            </tbl>
            <p>According to the frequencies in our population-specific <it>CFTR </it>genotype distribution the patients were stratified into 4 <it>CFTR</it>-specific groups (Table <tblr tid="T1">1</tblr>). Group 1 consisted of those with a homozygous &#916;F508 mutation (&#916;F508(2): n = 86, 56.6%). Group 2 included compound heterozygotes for the second most common mutation found in Switzerland, 3905insT and &#916;F508 (3905insT/&#916;F: n = 13, 8.6%). Compound heterozygotes for the nonsense mutation R553X and &#916;F508 constituted group 3 with the third most common genotype (R553X/&#916;F: n = 10 6.6%), whereas the fourth group comprised 43 miscellaneous genotypes (28.3%).</p>
            <p>Stratification into different types of bronchial infection (Table <tblr tid="T1">1</tblr>) was performed by defining those free of any colonization (n = 6, 3.9%), those presenting with intermittent colonization with one or more positive cultures of either <it>H. influenzae</it>, <it>S. aureus, or St. maltofilia </it>(n = 34, 22.4%), those chronically infected with <it>S.aureus </it>(n = 19, 12.5%), those chronically infected by <it>P. aeruginosa </it>(n = 36, 23.7%), and those culture positive for both <it>P. aeruginosa </it>and <it>S. aureus </it>(n = 57, 37.5%).</p>
         </sec>
         <sec>
            <st>
               <p>Progression of lung function over time</p>
            </st>
            <p>Figure <figr fid="F1">1</figr> shows mean annual changes of static lung volume (panel A), changes in LCI, and sR<sub>eff </sub>(panel B) as estimates of intrapulmonary gas distribution and airway narrowing, and changes in flow volume curve derived indexes (panel C) in relation to patient age over an age range of 6 to 18 years. Values are presented as mean z-scores, equal to SDS &#177; SEM. FRC<sub>pleth</sub>, obtained by whole body-plethysmography, increased from 1.43 &#177; 0.15 SDS at age 6 y to 3.05 &#177; 0.22 SDS at the age of 18 y. Thus, while 38.7% of patients aged 6 to 8 yrs were found to have pulmonary hyperinflation (SDS-value > 2), the proportion of children continued to increase, with 67.0% observed to have hyperinflation at 18 y. Trapped gas volume also increased from 0.62 &#177; 0.16 at 6 y to 2.65 &#177; 0.22 at 18 y. The proportion of patients with V<sub>TG </sub>increased from 15% to 54% during this period. In contrast, FRC<sub>MBNW </sub>values obtained by multibreath washout decreased during this period from 0.98 &#177; 0.15 SDS at age 6 y to 0.41 &#177; 0,16 at 18 y.</p>
            <fig id="F1">
               <title>
                  <p>Figure 1</p>
               </title>
               <caption>
                  <p>Progression of lung function with age</p>
               </caption>
               <text>
                  <p><b>Progression of lung function with age</b>. A) Changes assessed by repeated measurements of plethysmographic functional residual capacity (FRC<sub>pleth</sub>), functional residual capacity obtained by the multibreath nitrogen washout (FRC<sub>MBNW</sub>), and volume of trapped gas (V<sub>TG</sub>). V<sub>TG </sub>was calculated as the difference between FRC<sub>pleth </sub>and FRC<sub>MBNW</sub>. B) Changes of lung clearance index (LCI) as a measure of ventilation inhomogeneities and effective specific airway resistance (sR<sub>eff</sub>), as measure of airway narrowing. C) Changes of forced vital capacity (FVC), forced expired volume in one second (FEV1) and maximal expired flow at 50% FVC (FEF<sub>50</sub>) in relation to age. All parameters expressed as z-scores.</p>
               </text>
               <graphic file="1465-9921-7-138-1"/>
            </fig>
            <p>Table <tblr tid="T2">2</tblr> demonstrates the age related progression of all lung function parameters with the exception of FVC as assessed by LMM analysis and expressed as the changes occurring in mean regression slope for each index. Rates of progression were most significant for FEF<sub>50 </sub>(slope: -0.505, <it>p </it>&lt; 0.0001), sR<sub>eff </sub>(slope: 0.381, <it>p </it>&lt; 0.001), and LCI (slope: 0.281, <it>p </it>&lt; 0.001). Less pronounced progression was also identified for pulmonary hyperinflation (FRC<sub>pleth</sub>: slope: 0.154, <it>p </it>&lt; 0.0001),) and trapped gas (V<sub>TG</sub>: slope: 0.185, <it>p </it>&lt; 0.0001).</p>
            <tbl id="T2">
               <title>
                  <p>Table 2</p>
               </title>
               <caption>
                  <p>Progression with age (slope of regression) assessed by linear mixed-effect model analysis (LMM) in 152 patients with cystic fibrosis, evaluated over an age-range of 6 to 18 years.</p>
               </caption>
               <tblbdy cols="6">
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>
                           <b>Progression with age of lung function</b>
                        </p>
                     </c>
                     <c cspan="2" ca="center">
                        <p>95% confidence interval</p>
                     </c>
                     <c cspan="2" ca="center">
                        <p>
                           <b>Age as fixed effect</b>
                        </p>
                     </c>
                  </r>
                  <r>
                     <c cspan="6">
                        <hr/>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>lower</p>
                     </c>
                     <c ca="center">
                        <p>upper</p>
                     </c>
                     <c ca="center">
                        <p>
                           <it>F-value</it>
                        </p>
                     </c>
                     <c ca="center">
                        <p>
                           <it>Significance</it>
                        </p>
                     </c>
                  </r>
                  <r>
                     <c cspan="6">
                        <hr/>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>
                           <b>FRC<sub>pleth</sub></b>
                        </p>
                     </c>
                     <c ca="center">
                        <p>0.142</p>
                     </c>
                     <c ca="center">
                        <p>0.126</p>
                     </c>
                     <c ca="center">
                        <p>0.158</p>
                     </c>
                     <c ca="center">
                        <p>298.3</p>
                     </c>
                     <c ca="center">
                        <p>0.0001</p>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>
                           <b>FRC<sub>MBNW</sub></b>
                        </p>
                     </c>
                     <c ca="center">
                        <p>-0.062</p>
                     </c>
                     <c ca="center">
                        <p>-0.081</p>
                     </c>
                     <c ca="center">
                        <p>-0.043</p>
                     </c>
                     <c ca="center">
                        <p>42.1</p>
                     </c>
                     <c ca="center">
                        <p>0.001</p>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>
                           <b>LCI</b>
                        </p>
                     </c>
                     <c ca="center">
                        <p>0.240</p>
                     </c>
                     <c ca="center">
                        <p>0.204</p>
                     </c>
                     <c ca="center">
                        <p>0.276</p>
                     </c>
                     <c ca="center">
                        <p>174.4</p>
                     </c>
                     <c ca="center">
                        <p>0.0001</p>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>
                           <b>V<sub>TG</sub></b>
                        </p>
                     </c>
                     <c ca="center">
                        <p>0.180</p>
                     </c>
                     <c ca="center">
                        <p>0.160</p>
                     </c>
                     <c ca="center">
                        <p>0.200</p>
                     </c>
                     <c ca="center">
                        <p>320.9</p>
                     </c>
                     <c ca="center">
                        <p>0.0001</p>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>
                           <b>sR<sub>eff</sub></b>
                        </p>
                     </c>
                     <c ca="center">
                        <p>0.373</p>
                     </c>
                     <c ca="center">
                        <p>0.319</p>
                     </c>
                     <c ca="center">
                        <p>0.427</p>
                     </c>
                     <c ca="center">
                        <p>182.1</p>
                     </c>
                     <c ca="center">
                        <p>0.0001</p>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>
                           <b>FVC</b>
                        </p>
                     </c>
                     <c ca="center">
                        <p>0.005</p>
                     </c>
                     <c ca="center">
                        <p>-0.023</p>
                     </c>
                     <c ca="center">
                        <p>0.033</p>
                     </c>
                     <c ca="center">
                        <p>0.1</p>
                     </c>
                     <c ca="center">
                        <p>n.s.</p>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>
                           <b>FEV<sub>1</sub></b>
                        </p>
                     </c>
                     <c ca="center">
                        <p>-0.177</p>
                     </c>
                     <c ca="center">
                        <p>-0.206</p>
                     </c>
                     <c ca="center">
                        <p>-0.148</p>
                     </c>
                     <c ca="center">
                        <p>139.6</p>
                     </c>
                     <c ca="center">
                        <p>0.0001</p>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>
                           <b>FEF<sub>50</sub></b>
                        </p>
                     </c>
                     <c ca="center">
                        <p>-0.474</p>
                     </c>
                     <c ca="center">
                        <p>-0.527</p>
                     </c>
                     <c ca="center">
                        <p>-0.420</p>
                     </c>
                     <c ca="center">
                        <p>304.0</p>
                     </c>
                     <c ca="center">
                        <p>0.0001</p>
                     </c>
                  </r>
               </tblbdy>
            </tbl>
         </sec>
         <sec>
            <st>
               <p>Effect of early pulmonary hyperinflation and gas trapping on later functional outcome</p>
            </st>
            <p>Figure <figr fid="F2">2</figr> shows the progression of FRC<sub>pleth </sub>(A) and V<sub>TG </sub>(B) over time for each of the 4 functional groups, stratified according to age at entry (age 6 to 8 yrs). Children initially presenting with both pulmonary hyperinflation and trapped gas (group PH&amp;TG) demonstrated highest values for both FRC<sub>pleth </sub>and V<sub>TG</sub>. These patients also showed consistently higher degrees of hyperinflation over time in comparison to those in whom pulmonary hyperinflation occurred in the absence of trapped gases (group PH). Furthermore, age related progression of disease was associated with development of similar degrees of gas trapping between functional groups as evidenced by the similar slopes of these parameters in Figure <figr fid="F2">2</figr>. Occurrence of ventilation inhomogeneities in the absence of hyperinflation was associated with both progression of both FRC<sub>pleth </sub>and trapped gas. Presence of initially normal lung function or early ventilation inhomogeneities still resulted in progressive elevation of both FRC<sub>pleth </sub>and V<sub>TG </sub>over time. However, CF patients with early severe functional deficits (groups PH and PH&amp;TG) showed consistent differences (p &lt; 0.001) from the other groups, which persisted throughout the entire duration of the study (i.e. demonstrated tracking).</p>
            <fig id="F2">
               <title>
                  <p>Figure 2</p>
               </title>
               <caption>
                  <p>Progression of FRC<sub>pleth </sub>over time in 152 patients with lung function stratified at age 6 to 8 years into 4 functional severity groups</p>
               </caption>
               <text>
                  <p><b>Progression of FRC<sub>pleth </sub>over time in 152 patients with lung function stratified at age 6 to 8 years into 4 functional severity groups</b>. Group PH&amp;TG (pulmonary hyperinflation and trapped gas): FRC<sub>pleth </sub>and V<sub>TG </sub>> 2SDS; group PH (pulmonary hyperinflation without trapped gas): FRC<sub>pleth </sub>> 2SDS; group VIH (ventilation inhomogeneities): LCI > 2SDS; group FN: functionally normal.</p>
               </text>
               <graphic file="1465-9921-7-138-2"/>
            </fig>
         </sec>
         <sec>
            <st>
               <p>Relationship between lung function parameters and CFTR genotype</p>
            </st>
            <p>Associations between lung function and <it>CFTR </it>genotypes, progression of changes in specific functional indexes within <it>CFTR </it>genotype groups and comparisons between functional groups are given in Table <tblr tid="T3">3</tblr>. Potential associations were assessed by LMM analysis incorporating data from the 3 specific mutation groups (i.e. excluding the group comprising miscellaneous genotypes). Age and the 3 most frequent <it>CFTR </it>groups were taken as fixed effects and the patient-specific intercept as random effect. The most significant age related progression was identified within the 3905insT/&#916;F mutation group for FEF<sub>50 </sub>(slope: -0.738) and sR<sub>eff</sub>(slope 0.549; panel <b>A</b>). The effect of mutation group was assessed by analyzing the position of the intercept through the ordinate. This value was found to be significantly higher for LCI (5.077), and FEV<sub>1 </sub>(4.542, panel <b>B</b>). With the exception of LCI, significant differences in the values for the regression slope were found between <it>CFTR </it>genotype and lung function indices. The strongest associations were observed for FEF<sub>50 </sub>(<it>F </it>= 14.255, <it>p </it>&lt; 0.0001) and FEV<sub>1 </sub>(<it>F </it>= 13.066, <it>p </it>&lt; 0.0001). FEF<sub>50 </sub>differentiated best between <it>CFTR </it>genotypes, if &#916;F508(2) group was taken as the baseline value (Table <tblr tid="T3">3</tblr>, panel <b>C</b>). Children in whom the R553X/&#916;F mutation was present demonstrated the lowest values for all lung function parameters at time of initial measurement (age 6 to 8 yrs). Those with the &#916;F508(2) mutation had higher initial values. Maximum values for parameters obtained at initial measurement were observed in the 3905ins group.</p>
            <tbl id="T3">
               <title>
                  <p>Table 3</p>
               </title>
               <caption>
                  <p>Progression with age of lung function within genetic groups stratified according frequency of <it>CFTR </it>mutations.</p>
               </caption>
               <tblbdy cols="14">
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>
                           <b>
                              <it>A</it>
                           </b>
                        </p>
                     </c>
                     <c ca="center">
                        <p>
                           <b>Progression with age of lung function</b>
                        </p>
                     </c>
                     <c ca="center">
                        <p>
                           <b>
                              <it>B</it>
                           </b>
                        </p>
                     </c>
                     <c cspan="4" ca="center">
                        <p>
                           <b>Comparison of progression between genetic groups</b>
                        </p>
                     </c>
                     <c ca="center">
                        <p>
                           <b>C</b>
                        </p>
                     </c>
                     <c cspan="2" ca="center">
                        <p>
                           <b>Comparison of progressions within groups in relation to &#916;F508(2) *</b>
                        </p>
                     </c>
                     <c ca="center">
                        <p>
                           <b>D</b>
                        </p>
                     </c>
                     <c ca="center">
                        <p>delta of <b>Power analysis </b>0.8</p>
                     </c>
                  </r>
                  <r>
                     <c cspan="14">
                        <hr/>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c cspan="2" ca="center">
                        <p>
                           <it>Slopes within groups</it>
                        </p>
                     </c>
                     <c cspan="2" ca="center">
                        <p>Intercept at age 6 to 8 yrs mean comparison</p>
                     </c>
                     <c cspan="2" ca="center">
                        <p>Slope differences (age range 6 to 18 yrs)</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
                  <r>
                     <c cspan="14">
                        <hr/>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>
                           <it>F-value</it>
                        </p>
                     </c>
                     <c ca="center">
                        <p><it>sign</it>.</p>
                     </c>
                     <c ca="center">
                        <p>
                           <it>F-value</it>
                        </p>
                     </c>
                     <c ca="center">
                        <p><it>sign</it>.</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p><it>mean diff</it>.</p>
                     </c>
                     <c ca="center">
                        <p><it>sign</it>.</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
                  <r>
                     <c cspan="14">
                        <hr/>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>
                           <b>FRC<sub>pleth</sub></b>
                        </p>
                     </c>
                     <c ca="center">
                        <p>&#916;F508(2)</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.151</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>1.117</p>
                     </c>
                     <c ca="center">
                        <p>n.s.</p>
                     </c>
                     <c ca="center">
                        <p>3.979</p>
                     </c>
                     <c ca="center">
                        <p>0.008</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>3905insT/&#916;F</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.215</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>1.057</p>
                     </c>
                     <c ca="center">
                        <p>0.048</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.09154</p>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>R553X/&#916;F</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.165</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.120</p>
                     </c>
                     <c ca="center">
                        <p>n.s.</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.09969</p>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>
                           <b>LCI</b>
                        </p>
                     </c>
                     <c ca="center">
                        <p>&#916;F508(2)</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.247</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>5.077</p>
                     </c>
                     <c ca="center">
                        <p>0.002</p>
                     </c>
                     <c ca="center">
                        <p>0.491</p>
                     </c>
                     <c ca="center">
                        <p>n.s.</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>3905insT/&#916;F</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.291</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>1.865</p>
                     </c>
                     <c ca="center">
                        <p>0.006</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.200854</p>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>R553X/&#916;F</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.278</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.307</p>
                     </c>
                     <c ca="center">
                        <p>n.s.</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.236018</p>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>
                           <b>V<sub>TG</sub></b>
                        </p>
                     </c>
                     <c ca="center">
                        <p>&#916;F508(2)</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.198</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>3.372</p>
                     </c>
                     <c ca="center">
                        <p>0.019</p>
                     </c>
                     <c ca="center">
                        <p>6.499</p>
                     </c>
                     <c ca="center">
                        <p>0.0001</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>3905insT/&#916;F</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.233</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>1.036</p>
                     </c>
                     <c ca="center">
                        <p>0.011</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.113801</p>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>R553X/&#916;F</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.256</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.065</p>
                     </c>
                     <c ca="center">
                        <p>n.s.</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.128347</p>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>
                           <b>sR<sub>eff</sub></b>
                        </p>
                     </c>
                     <c ca="center">
                        <p>&#916;F508(2)</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.405</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.849</p>
                     </c>
                     <c ca="center">
                        <p>n.s.</p>
                     </c>
                     <c ca="center">
                        <p>10.043</p>
                     </c>
                     <c ca="center">
                        <p>0.0001</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>3905insT/&#916;F</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.549</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>1.297</p>
                     </c>
                     <c ca="center">
                        <p>n.s.</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.305402</p>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>R553X/&#916;F</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.741</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>3.298</p>
                     </c>
                     <c ca="center">
                        <p>0.039</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.328812</p>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>
                           <b>FEV<sub>1</sub></b>
                        </p>
                     </c>
                     <c ca="center">
                        <p>&#916;F508(2)</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>-0.185</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>4.542</p>
                     </c>
                     <c ca="center">
                        <p>0.004</p>
                     </c>
                     <c ca="center">
                        <p>13.066</p>
                     </c>
                     <c ca="center">
                        <p>0.0001</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>3905insT/&#916;F</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>-0.216</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>2.502</p>
                     </c>
                     <c ca="center">
                        <p>0.009</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.16809</p>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>R553X/&#916;F</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>-0.466</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.431</p>
                     </c>
                     <c ca="center">
                        <p>n.s.</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.18238</p>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
                  <r>
                     <c ca="left">
                        <p>
                           <b>FEF<sub>50</sub></b>
                        </p>
                     </c>
                     <c ca="center">
                        <p>&#916;F508(2)</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>-0.439</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>1.774</p>
                     </c>
                     <c ca="center">
                        <p>n.s.</p>
                     </c>
                     <c ca="center">
                        <p>14.255</p>
                     </c>
                     <c ca="center">
                        <p>0.0001</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>3905insT/&#916;F</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>-0.738</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>1.011</p>
                     </c>
                     <c ca="center">
                        <p>n.s.</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.30235</p>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>R553X/&#916;F</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>-1.029</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>2.952</p>
                     </c>
                     <c ca="center">
                        <p>0.002</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>0.32759</p>
                     </c>
                  </r>
                  <r>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>Misc</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c ca="center">
                        <p>-0.354</p>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                     <c>
                        <p/>
                     </c>
                  </r>
               </tblbdy>
               <tblfn>
                  <p>* adjusted for multiple comisons according Bonferroni</p>
               </tblfn>
            </tbl>
         </sec>
         <sec>
            <st>
               <p>Relationship between lung function and different combinations of infection</p>
            </st>
            <p>The impact of different types of infection on progression of lung function is shown in Figure <figr fid="F3">3</figr>. Age and the 4 most frequent types of infection were taken as fixed effects and the patient-specific intercept as random effect. Children with chronic <it>P. aeruginosa </it>infection (PA) showed the most rapid rate of progression when examined for all lung function parameters. Within this group progressive changes in parameter values were most rapid for FEF<sub>50 </sub>(slope: -0.582) and sR<sub>eff </sub>(slope: 0.480). Group effects, <it>i.e</it>. initial already high intercept were detected for FEV<sub>1 </sub>(19.214), and LCI (7.345,). Significant relationships were identified between infection type and progression of lung function indexes, with strongest associations observed for FEF<sub>50 </sub>(<it>F </it>= 7.994, <it>p </it>&lt; 0.0001) and FRC<sub>pleth </sub>(<it>F </it>= 6.020, <it>p </it>&lt; 0.0001). Of all the groups in which infection was present, those with chronic <it>S. aureus </it>infection (<it>SA</it>) showed the least aggressive rate of progression of functional index values. Interestingly, although not significant but as tendency observed for each lung function parameter, <it>P. aeruginosa </it>combined with other infection (<it>PA_</it>comb) presented with more progression than <it>P. aeruginosa </it>infection (<it>PA</it>) alone. LCI proved to be the index most sensitive for differentiating between infection types (<it>p </it>&lt; 0.0001) when the group free of any colonization or infection was taken as baseline.</p>
            <fig id="F3">
               <title>
                  <p>Figure 3</p>
               </title>
               <caption>
                  <p>Progression with age within 5 different types of colonization or infection respectively, depicted for each lung function parameter</p>
               </caption>
               <text>
                  <p><b>Progression with age within 5 different types of colonization or infection respectively, depicted for each lung function parameter</b>. Slopes were calculated from the fixed values predicted according to group using linear mixed-effect model analysis. (PA: chronically infected by <it>P. aeruginosa</it>; PA_comb: chronically infected by <it>P. aeruginosa </it>and other bacteria; SA: chronically infected only by <it>S. aureus</it>; intermit.: intermittently colonized by several bacteria; free: free from any bacterial colonisations).</p>
               </text>
               <graphic file="1465-9921-7-138-3"/>
            </fig>
         </sec>
      </sec>
      <sec>
         <st>
            <p>Discussion</p>
         </st>
         <p>This study demonstrates that progression of pulmonary hyperinflation and the presence of trapped gas are important mechanical features of disease evolution in patients with cystic fibrosis. Data analyzed from a cohort of 152 CF patients, revealed the presence of pulmonary hyperinflation in more than one third (37.5%) of cases as early as age 6 to 8 years. In half of these (18.4%), pulmonary hyperinflation was associated with trapped gas. Both functional abnormalities deteriorated with age (Figure <figr fid="F2">2</figr>). Ventilation inhomogeneities have been previously shown to represent the earliest and most rapidly progressive functional abnormality in CF <abbrgrp><abbr bid="B16">16</abbr></abbrgrp>. The current findings suggest that ventilation inhomogeneities are accompanied by steadily increasing hyperinflation, gas trapping, airway obstruction, and flow limitation. All patients identified as having increased V<sub>TG </sub>also demonstrated increased values for LCI. Rate of progression of functional abnormality was most rapid within a subgroup of patients within whom both pulmonary hyperinflation and trapped gas were present (Figure <figr fid="F2">2</figr>).</p>
         <p>The relationships between pulmonary hyperinflation and gas trapping and deterioration of lung function in CF are presented here using longitudinal data. Previous investigations have demonstrated that pulmonary hyperinflation influences lung mechanics in terms of increased work of breathing, greater severity of breathlessness, impaired respiratory muscle function <abbrgrp><abbr bid="B53">53</abbr><abbr bid="B54">54</abbr><abbr bid="B55">55</abbr><abbr bid="B56">56</abbr><abbr bid="B57">57</abbr><abbr bid="B58">58</abbr></abbrgrp> and increased energy expenditure and oxygen consumption <abbrgrp><abbr bid="B55">55</abbr><abbr bid="B56">56</abbr><abbr bid="B59">59</abbr></abbrgrp>. Recognition of functional deterioration is therefore critical to the ongoing management of patients with CF. Trapped gas occurs as a consequence of absent communicative pathways between small and large airways, thus reducing the alveolar surface area available for gas exchange <abbrgrp><abbr bid="B37">37</abbr><abbr bid="B42">42</abbr><abbr bid="B60">60</abbr></abbrgrp>. Pulmonary hyperinflation and the development of trapped gas are closely associated with different types of chronic bronchial infection, especially <it>P. aeruginosa </it>(Figure <figr fid="F3">3</figr>). Of even greater interest, our results suggest that the <it>CFTR </it>genotype plays an important role in determining the longitudinal functional progression of lung disease in CF (Table <tblr tid="T3">3</tblr>).</p>
         <p>Finally, this work in CF patients provides further confirmatory evidence for progressive tracking of lung function abnormalities already observed in other chronic respiratory illnesses such as bronchial asthma <abbrgrp><abbr bid="B27">27</abbr></abbrgrp> and chronic lung disease of infancy <abbrgrp><abbr bid="B25">25</abbr></abbrgrp>. Ranganathan et al. demonstrated tracking between parameters of airway function and growth in infants and young children <abbrgrp><abbr bid="B25">25</abbr></abbrgrp>. Children with CF and better initial FEV<sub>1 </sub>have a slower rate of decline in lung function than those in whom initial FEV<sub>1 </sub>was already very low <abbrgrp><abbr bid="B61">61</abbr></abbrgrp>. The authors concluded that young children with good pulmonary function and intercurrent pulmonary illness need not be treated as aggressively as children with documented lower FEV<sub>1</sub>. Our own data support this finding, since children with evidence of severe disease early in life experienced more aggressive functional deterioration over the course of the study period.</p>
         <sec>
            <st>
               <p>Changes of lung volume during disease progression in CF</p>
            </st>
            <p>Elevation of FRC represents an almost universal accompaniment of significant intrathoracic airway obstruction. Elevated end-expiratory level in patients with severe lung disease is achieved by a strategy adopted to increase expiratory flow, especially during exercise. Patients thus meet their ventilatory requirements at rest by increasing breathing frequency rather than tidal volume in order to minimize the increase of resistive work associated with thoracic wall excursion. However, pulmonary hyperinflation affects respiratory muscle function <abbrgrp><abbr bid="B62">62</abbr></abbrgrp>. Elevation of end-expiratory level above relaxation volume places an extra load on the inspiratory musculature at end-expiration, whereby an additional "threshold" load related to the elastic recoil of the respiratory system must be overcome prior to commencement of inspiratory flow. Hyperinflation, together with loss of static recoil occurring in relation to airflow limitation results in altered respiratory muscle function <abbrgrp><abbr bid="B55">55</abbr><abbr bid="B56">56</abbr></abbrgrp>. There continues to be only limited understanding of how respiratory muscle function is altered in patients with hyperinflation. Animal experiments indicate that hyperinflation is detrimental to the functional effectiveness of the diaphragm, but may provide mechanical benefit to the parasternal intercostals <abbrgrp><abbr bid="B63">63</abbr></abbrgrp>. Patients with severe hyperinflation demonstrate more pronounced diaphragmatic shortening than intercostal and accessory muscle shortening <abbrgrp><abbr bid="B64">64</abbr></abbrgrp>. These patients also exhibit clear signs of reduced diaphragmatic functional capacity which correlates with the degree of airflow obstruction <abbrgrp><abbr bid="B64">64</abbr><abbr bid="B65">65</abbr></abbrgrp>. Studies of interactions between pulmonary hyperinflation and inspiratory muscle function have highlighted the reduced muscular efficiency and predisposition to fatigue occurring in CF <abbrgrp><abbr bid="B57">57</abbr></abbrgrp>.</p>
            <p>Preferential impairment of the peripheral skeletal musculature is frequently seen in patients with CF. Typically, respiratory muscle strength is preserved while the quadriceps is weakened <abbrgrp><abbr bid="B56">56</abbr></abbrgrp>. This observation is consistent with the diaphragm benefiting from a continuous training stimulus secondary to increased inspiratory impedance. Therefore, hyperinflation does not impair force generation of the diaphragm to the same extent in cystic fibrosis as may occur in other chronic respiratory diseases. Normal inspiratory muscle strength is commonly observed in CF and diaphragmatic adaptation in this condition may extend beyond that usually observed in adult COPD, where maximal diaphragmatic strength is lower than in normal individuals. The relative contribution of inspiratory musculature to overall respiratory muscle weakness in CF patients has also been assessed <abbrgrp><abbr bid="B66">66</abbr></abbrgrp>. Major determinants of inspiratory muscle weakness include muscle mass, hyperinflation, gas trapping and to a lesser extent nutritional status <abbrgrp><abbr bid="B56">56</abbr></abbrgrp>. Thus, gradual deterioration in pulmonary function, together with an associated increase in work of breathing and inspiratory muscle weakness all play important roles in the development of ventilatory failure <abbrgrp><abbr bid="B53">53</abbr><abbr bid="B54">54</abbr><abbr bid="B57">57</abbr><abbr bid="B58">58</abbr></abbrgrp>.</p>
         </sec>
         <sec>
            <st>
               <p>The role of the development of trapped gas</p>
            </st>
            <p>Identification of early pulmonary hyperinflation associated with trapped gas as the most severe functional group during childhood and adolescence may represent an early warning signal. Early gas trapping in this setting appears to progress to persistent and ongoing disruption of lung mechanics, leading to impairment of gas exchange <abbrgrp><abbr bid="B60">60</abbr><abbr bid="B67">67</abbr><abbr bid="B68">68</abbr><abbr bid="B69">69</abbr><abbr bid="B70">70</abbr><abbr bid="B71">71</abbr></abbrgrp>, increased energy expenditure <abbrgrp><abbr bid="B59">59</abbr><abbr bid="B72">72</abbr></abbrgrp>, and disruption of normal chest wall motion and exercise performance <abbrgrp><abbr bid="B73">73</abbr></abbrgrp>. Together with chronic infection, poor energy intake and a catabolic state <abbrgrp><abbr bid="B55">55</abbr><abbr bid="B56">56</abbr><abbr bid="B59">59</abbr></abbrgrp>, further deterioration of respiratory muscle function occurs <abbrgrp><abbr bid="B55">55</abbr><abbr bid="B56">56</abbr></abbrgrp>. A reduction in trapped gas volume in association with improved maximal working capacity is observed in CF patients following long-term chest physiotherapy <abbrgrp><abbr bid="B74">74</abbr><abbr bid="B75">75</abbr></abbrgrp>. In normal subjects, expiration to residual volume results in a degree of small airway closure, some atelectasis of dependent lung regions and gas trapping <abbrgrp><abbr bid="B76">76</abbr></abbrgrp>. The extent to which this occurs is related to age <abbrgrp><abbr bid="B77">77</abbr></abbrgrp>, as highlighted recently by Milic-Emili <abbrgrp><abbr bid="B78">78</abbr></abbrgrp>. Closure of small airways results in discontinuity of expiratory airflow. Healthy subjects maintain FRC above a critical volume at which airway closure occurs (closing volume) and therefore demonstrate no gas trapping <abbrgrp><abbr bid="B79">79</abbr></abbrgrp>. In young children, closing volume and FRC approximate each other closely <abbrgrp><abbr bid="B79">79</abbr></abbrgrp>, thus further potentiating gas trapping. In the presence of disease, and particularly in CF, impaired airway clearance mechanisms and inflammatory changes associated with chronic infection disrupt small airway patency, leading to discontinuity and limitation of expiratory airflow. Loss of static recoil associated with pulmonary hyperinflation may further aggravate this process <abbrgrp><abbr bid="B80">80</abbr></abbrgrp> and increase the potential for gas trapping<abbrgrp><abbr bid="B79">79</abbr></abbrgrp>. We have recently shown that an index of ventilation inhomogeneity, the LCI, progresses with age in patients with CF, particularly after the onset of chronic <it>P. aeruginosa </it>infection <abbrgrp><abbr bid="B16">16</abbr></abbrgrp> and allergic bronchopulmonary aspergillosis (ABPA) <abbrgrp><abbr bid="B41">41</abbr></abbrgrp>. Whilst an increase in gas trapping results in a concordant rise in ventilation inhomogeneities, the degree to which airway closure occurs will also depend upon the age-dependant relationship between FRC and closing volume and on airway resistance <abbrgrp><abbr bid="B77">77</abbr><abbr bid="B79">79</abbr><abbr bid="B81">81</abbr><abbr bid="B82">82</abbr><abbr bid="B83">83</abbr></abbrgrp>. Since the separation between FRC and closing volume is likely to be reduced at younger ages, the appearance of severe ventilation inhomogeneities and pulmonary hyperinflation in this age group may predispose towards early gas trapping and earlier onset of age related progression of lung function deterioration (tracking). Early identification of gas trapping may therefore be critical to instituting therapeutic measures aimed at retarding or reversing this situation.</p>
         </sec>
         <sec>
            <st>
               <p>Relationship between CFTR genotypes and progression of hyperinflation and gas trapping</p>
            </st>
            <p>A relationship between <it>CFTR </it>genotype and severity of pulmonary disease in CF has proven difficult to establish. Nevertheless, the variability of pulmonary function at time of diagnosis in infants <abbrgrp><abbr bid="B21">21</abbr></abbrgrp> and children <abbrgrp><abbr bid="B84">84</abbr><abbr bid="B85">85</abbr><abbr bid="B86">86</abbr></abbrgrp> has been found to be partially related to the genotype. In comparison to the inframe homozygotes &#916;F508(2) and nonsense R553X/&#916;F compound heterozygotes, patients carrying one frameshift mutation 3905insT have a poorer prognosis with respect to the onset of pulmonary disease, progression of lung function, and mortality <abbrgrp><abbr bid="B87">87</abbr></abbrgrp>. Schaedel et al. used FEV<sub>1 </sub>% normal predicted to demonstrate a slower rate of decline in patients with missense mutations compared with &#916;F508(2) homozygotes <abbrgrp><abbr bid="B86">86</abbr></abbrgrp>, and Cory et al. used LMM analysis to show a slower rate of pulmonary function decline in some patients with non-&#916;F508 mutations <abbrgrp><abbr bid="B51">51</abbr></abbrgrp>. We undertook a similar statistical approach to evaluate potential associations between repeated lung function measurements and the most frequent <it>CFTR </it>genotypes in Switzerland, &#916;F508(2), 3905insT/&#916;F and R553X/&#916;F. Significant differences in lung function indices were identified between the 3905insT/&#916;F compound heterozygote and &#916;F508(2) homozygote mutation groups for FRC<sub>pleth</sub>, LCI and V<sub>TG</sub>, as well as between R553X/&#916;F compound heterozygotes and &#916;F508(2) homozygotes for sReff, and FEF<sub>50 </sub>(Table <tblr tid="T3">3</tblr>). Confirming previous findings <abbrgrp><abbr bid="B15">15</abbr><abbr bid="B21">21</abbr><abbr bid="B51">51</abbr><abbr bid="B88">88</abbr><abbr bid="B89">89</abbr></abbrgrp>, our data demonstrate that the 3905insT mutation is associated with severe lung disease, manifesting early in life <abbrgrp><abbr bid="B21">21</abbr></abbrgrp>, whereas the R553X/&#916;F mutation seems to provide milder pulmonary involvement during the first 5 to 6 yrs of life, thereafter however, to be exposed to a much more pronounced progression compared with both the &#916;F508 and the 3905insT/&#916;F. In addition, regressions of fixed predicted values obtained by the LMM analysis indicate significantly higher rates of progression of small airway disease in patients within the 3905insT/&#916;F group compared to &#916;F508(2) homozygotes. The effect is even more pronounced for the R553X/&#916;F group. Thus, we conclude that <it>CFTR </it>genotypes clearly act as an important determinant of disease progression and hence outcome, when lung function parameters are interpreted in terms of variance-based data (<it>z</it>-scores), and in relation to gender- and age-specific regression equations <abbrgrp><abbr bid="B38">38</abbr><abbr bid="B39">39</abbr><abbr bid="B40">40</abbr></abbrgrp>.</p>
         </sec>
         <sec>
            <st>
               <p>The role of environmental factors</p>
            </st>
            <p>In the present study patients chronically colonized with <it>P. aeruginosa </it>showed a significantly worse disease course (Figure <figr fid="F3">3</figr>) compared to other types of infection. This was especially the case in relation to ventilation inhomogeneities. This finding is consistent with observations of Wilmott et al. showing a strong association between <it>P. aeruginosa </it>status and mortality <abbrgrp><abbr bid="B90">90</abbr></abbrgrp>, and the associations between FEV<sub>1 </sub>and <it>P. aeruginosa </it>infection found by Kerem et al <abbrgrp><abbr bid="B91">91</abbr></abbrgrp>. More noteworthy, is the finding that in addition to age of onset of chronic <it>P. aeruginosa </it>infection, colonization status at the time of lung function evaluation is important.</p>
         </sec>
         <sec>
            <st>
               <p>Methodological limitations</p>
            </st>
            <p>The current study represents a very large patient cohort, many of whom were followed up over a long time period. An important limitation of these types of data resides in the ability to obtain repeated measurements of lung function annually, over a substantial range of time. However, we obtained serial annual measurements over a 10-year period in at least 50% of the children. Linear mixed-effects model analysis provides an ideal statistical method for the interpretation of repeated measurement data such as these, particularly when repeated testing results in small proportions of incomplete data. A second potential influence on the results of this type of analysis involves the use of subgroups, since the relatively small number of patients within each group may result in relatively high levels of variability. The adequacy of stratification within subgroups is critical to the interpretation of differences observed in outcome measures between each subgroup. Whilst stratification of bronchial infection subgroups was adequate, stratification of specific <it>CFTR </it>genotypes required a frequency based approach to search for significant associations. This finding may be intriguing for some research groups where genotype-phenotype associations with pulmonary involvement have not been able to be identified in CF. Whilst well-established associations between pancreatic insufficiency and genotype are recognised based on a clear "on-off" selection, studies investigating lung function indexes and genotype associations may need to consider several functional parameters in order to clearly identify those likely to be affected by mutational changes. Our results suggest that parameters representing pulmonary hyperinflation, ventilation inhomogeneities, gas trapping and airway narrowing are required to be considered in addition to those quantifying the degree of bronchial obstruction. Moreover, lung function data must be presented in a form independent of gender and growth status (z-transformation). The current study presents longitudinal data and expresses changes in SDS in terms of cross-sectional reference equations <abbrgrp><abbr bid="B16">16</abbr></abbrgrp>. The volume of trapped gas was calculated as the difference between FRC measured plethysmographically (FRC<sub>pleth</sub>) and by the FRC obtained by gas washout (FRC<sub>MBNW</sub>). It must be borne in mind that the difference between these two values provides an index that correlates with trapped gas, but is not equal to trapped gas. In the presence of significant airway obstruction, FRC is overestimated by plethysmography. However, we used a non-panting method that reduces this artifact by allowing greater time for equilibration between alveolar and mouth pressure. Finally, genotype-phenotype association studies investigating pulmonary involvement in CF are complex and require determination of factors such as available lung function parameters and duration of life span during which data are acquired. A specific question is how the genetic background should be categorized. Possible categorizations might include &#916;F508 versus non-&#916;F508, or in terms of molecular mechanisms and consequences observed at the gene or protein level. It has to be kept in mind, that our cohort study represents primarily the <it>CFTR </it>genotype distribution for Switzerland, where a substantial proportion of patients carry the severe CF mutation (3905insT/&#916;F), which is associated with the highest mortality rate <abbrgrp><abbr bid="B21">21</abbr><abbr bid="B37">37</abbr><abbr bid="B44">44</abbr><abbr bid="B88">88</abbr></abbrgrp>.</p>
         </sec>
      </sec>
      <sec>
         <st>
            <p>Summary</p>
         </st>
         <p>This study demonstrates that pulmonary hyperinflation and development of trapped gas represent major functional features of disease progression in children with CF. Children with severe pulmonary hyperinflation and gas trapping at age 6&#8211;8 y have the most significant rate of disease progression over time. As has been reported previously in childhood asthma, tracking of lung function abnormalities in CF commences early in life, and is considerably influenced by the <it>CFTR </it>genotype. Furthermore, the present study shows that FRC<sub>pleth</sub>, and hence the degree of pulmonary hyperinflation best differentiate between different types of bronchial infection. Chronic <it>P. aeruginosa </it>infection appears to be the most important infective contributor to disease progression. The observed associations between <it>CFTR </it>genotypes and lung function characteristics, as well as the associations between different types of bronchial infection with pulmonary hyperinflation stress the need to include a range of tests when assessing these patients, rather than relying simply on spirometry. Early assessment of airway obstruction, pulmonary hyperinflation and gas trapping in addition to ventilation inhomogeneities and in conjunction with <it>CFTR </it>genotyping provides a means for monitoring functional progression in CF disease.</p>
      </sec>
      <sec>
         <st>
            <p>Abbreviations</p>
         </st>
         <p>BTPS: body temperature and pressure saturated</p>
         <p>CF: Cystic Fibrosis</p>
         <p><it>CFTR</it>: Cystic Fibrosis Transmembrane conductance Regulator</p>
         <p>DNA: Deoxyribonucleid Acid</p>
         <p>FEV1: Forced Expiratory Volume in One second</p>
         <p>FEF<sub>50</sub>: Forced expiratory flow at 50 percent FVC</p>
         <p>FRC<sub>pleth</sub>: Functional residual capacity (plethysmographically determined)</p>
         <p>FRC<sub>MBNW</sub>: Functional residual capacity (determined by MBNW)</p>
         <p>FVC: Forced Vital Capacity</p>
         <p>LCI: Lung clearance index</p>
         <p>LMM: Linear mixed model</p>
         <p>MBNW: Multibreath nitrogen washout</p>
         <p>PA: <it>Pseudomonas aeruginosa</it></p>
         <p>SA: <it>Staphylococcus aureus</it></p>
         <p>SDS: Standard deviation score</p>
         <p>SEM: Stardard error of the mean</p>
         <p>sR<sub>eff</sub>: specific effective airway resistance</p>
         <p>SSCP/HD: single strand confirmation polymorphism/heteroduplex</p>
         <p>TLC: Total Lung Capacity</p>
         <p>V<sub>TG</sub>: volume of trapped gas</p>
      </sec>
      <sec>
         <st>
            <p>Competing interests</p>
         </st>
         <p>The author(s) declare that they have no competing interests.</p>
      </sec>
      <sec>
         <st>
            <p>Authors' contributions</p>
         </st>
         <p>RK designed, coordinated and conceived the study.</p>
         <p>DB took part in the interpretation of data and manuscript revision.</p>
         <p>RA participated in the data collection, interpretation of data and manuscript revision</p>
         <p>UF took part in the interpretation of data and revised the draft.</p>
         <p>SG performed the CF mutation screening, took part in the interpretation of data (especially genetics) and revising.</p>
         <p>All authors read and approved the final manuscript.</p>
      </sec>
      <sec>
         <st>
            <p>Funding</p>
         </st>
         <p>The study was supported by grants of the Swiss National Research Foundation (SNF 3200-040681.94_SG, 32-040562.95_RK, 3200-055697.98 _SG, 32-066767.02_SG) and the Foundation Telethon Action Switzerland. Dr. Baldwin was a fellow in the ERS Long Term Research Program.</p>
      </sec>
   </bdy>
   <bm>
      <ack>
         <sec>
            <st>
               <p>Acknowledgements</p>
            </st>
            <p>The authors are indebted to Prof. Martin H. Sch&#246;ni, M.D., Dr. Anna R&#252;deberg, M.D., Dr. Carmen Casaulta-Aebischer, M.D., Dr. Andrea Blum, M.D., and the entire nursing staff of the Bernese Cystic Fibrosis Clinic for their contribution in collecting the clinical data and in obtaining the samples for genotype analysis. The authors also thank Ms. Gisela Wirz for performing the lung function tests and database management.</p>
         </sec>
      </ack>
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